Package: pro 0.1.1
pro: Point-Process Response Model for Optogenetics
Optogenetics is a new tool to study neuronal circuits that have been genetically modified to allow stimulation by flashes of light. This package implements the methodological framework, Point-process Response model for Optogenetics (PRO), for analyzing data from these experiments. This method provides explicit nonlinear transformations to link the flash point-process with the spiking point-process. Such response functions can be used to provide important and interpretable scientific insights into the properties of the biophysical process that governs neural spiking in response to optogenetic stimulation.
Authors:
pro_0.1.1.tar.gz
pro_0.1.1.zip(r-4.5)pro_0.1.1.zip(r-4.4)pro_0.1.1.zip(r-4.3)
pro_0.1.1.tgz(r-4.4-any)pro_0.1.1.tgz(r-4.3-any)
pro_0.1.1.tar.gz(r-4.5-noble)pro_0.1.1.tar.gz(r-4.4-noble)
pro_0.1.1.tgz(r-4.4-emscripten)pro_0.1.1.tgz(r-4.3-emscripten)
pro.pdf |pro.html✨
pro/json (API)
| # Install 'pro' in R: |
| install.packages('pro', repos = c('https://rluo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rluo/pro/issues
Last updated 9 years agofrom:8a16db9128. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 12 2024 |
| R-4.5-win | NOTE | Oct 12 2024 |
| R-4.5-linux | NOTE | Oct 12 2024 |
| R-4.4-win | NOTE | Oct 12 2024 |
| R-4.4-mac | NOTE | Oct 12 2024 |
| R-4.3-win | NOTE | Oct 12 2024 |
| R-4.3-mac | NOTE | Oct 12 2024 |
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Model matrix for point-process responses | model.pro |
| Fit the PRO model | pro |
| Simulate optogenetic stimulation on a leaky-integrate-fire neuron | sim.lif |
